FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449037
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11690.2603348944519049No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10410.23182944835280833No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10390.23138405075750998No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8820.19642033952658688No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7740.17236886938047422No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7010.15611185715208323No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6550.14586771246022043No Hit
AACCAGGGTGACGTTAATCGGGAACACGTCAAAATAGGTATCAC6480.1443088208766761No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5850.13027879662477704No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT5660.12604751946944237No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5490.12226163990940614No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4600.1024414469186281No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4580.1019960493233297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)