FastQCFastQC Report
Wed 31 May 2023
EGAF00007946622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449037
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62791.3983257504392732No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14080.31355990709006165No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13920.30999672632767455No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10760.23962390627053No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10230.22782086999512288No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9750.21713132770796167No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7580.16880568861808715No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6880.15321677278264376No Hit
ATGTCCGATCACCACTTCCCGGCCTCCCTGC6670.1485400980320107No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6450.14364072448372853No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5520.12292973630235371No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5180.11535797718228119No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5090.11335368800343847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)