FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495850
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68701.3854996470706866No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9550.19259856811535747No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6420.12947463950791568No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6300.12705455278814157No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6190.12483613996168196No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5630.11354240193606938No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5240.10567712009680347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)