FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447795
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41040.9164908049442267No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25260.5640974106454963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16810.37539499101151197No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14250.3182259739389676No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10680.23850199309952097No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10670.23827867662658134No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG10430.2329190812760303No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9410.21014080103618846No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8480.1893723690528032No Hit
CTGAGCGATGTAAACGTGACTAACGGCAACG8280.18490603959401064No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG7850.17530343125760672No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA7800.17418684889290859No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6860.15319510043658371No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6810.15207851807188558No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6470.14448575799193827No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6440.1438158085731194No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6420.14336917562724014No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6420.14336917562724014No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6360.14202927678960237No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6300.14068937795196462No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6210.13867952969550798No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5590.12483390837325116No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5280.11791109771212274No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5240.11701783182036422No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT4830.10786185642983954No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4680.10451210933574515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)