FastQCFastQC Report
Sun 21 May 2023
EGAF00007946631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523424
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT39700.7584673228587149No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG39040.7458580424283182No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT38790.7410817998410466No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT27890.532837623036009No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT25440.48603044568074827No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG24870.47514061258176926No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22370.42737818670905425No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC18320.35000305679525584No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17590.33605642844042305No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17060.3259307941554075No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG16980.3244023965274806No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG13390.2558155529742618No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG13240.2529498074218989No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA12610.2409136761019747No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12610.2409136761019747No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12010.2294506938925231No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT10120.1933422999327505No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA10020.1914318028978419No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG9870.18856605734547902No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9780.18684661001406128No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8640.1650669438161032No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT7800.14901876872287095No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7380.1409946811762548No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT7120.13602738888549246No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT7100.13564528947851073No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6710.12819435104236718No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6420.12265390964113224No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5940.11348352387357094No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5250.10030109433270161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)