FastQCFastQC Report
Sun 21 May 2023
EGAF00007946636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439428
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22040.5015611203655661No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15390.35022802370354184No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14630.3329328126564534No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12880.29310831353486805No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10800.2457740517217838No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10510.23917456329592104No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10290.23416805483492176No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9260.2107284924947887No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7740.1761380704006117No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7100.1615736821504319No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6440.14655415676743402No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5920.13472059131416295No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5390.12265945729448283No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5350.12174918302884657No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5330.12129404589602848No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5280.12015620306398318No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5230.11901836023193789No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4920.11196373467325706No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4550.10354369771612187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)