FastQCFastQC Report
Sun 21 May 2023
EGAF00007946637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448336
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8030.179106741372542No Hit
CCACAGATCGTCGAAGATGTCGTTGCGACGACGGCAATCACGCG5190.1157613932407837No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5180.11553834624031976No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5100.11375397023660826No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4970.11085435923057707No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4900.10929303022732949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)