FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448336
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7940.17709931836836657No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5150.11486920523892795No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5140.11464615823846402No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5100.11375397023660826No Hit
GCCCTGATGCAGGCATACGGCGGCGGTGGTT4920.10973912422825738No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4880.10884693622640162No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4870.10862388922593769No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4850.10817779522500981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)