FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456396
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9090.19916914258670104No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9000.1971971708779218No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7860.17221886256671837No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6920.15162271360835763No Hit
GAAGTGGGTATCTGGGCATTCGTCGAACGGATCGTCGATGCTAT6920.15162271360835763No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4810.1053909324358671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)