FastQCFastQC Report
Sun 21 May 2023
EGAF00007946644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456396
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16090.35254471993619574No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9120.19982646648962743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8930.19566341510442686No Hit
ATGCGCGACTACCAGCGTCCGATGGTACAGT7280.15951060044347454No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5350.11722276268854241No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5090.11152595552984688No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5040.1104304156916362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)