FastQCFastQC Report
Sun 21 May 2023
EGAF00007946646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418808
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21210.5064373173387328No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19450.46441328723424574No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16880.4030486523657619No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14580.34813088575194356No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14010.33452083054764953No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13700.3271188706997001No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCC13300.3175679547668621No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG12660.3022864892743214No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11640.27793165364558464No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10860.2593073675765506No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10520.25118908903363835No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10180.24307081049072607No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8320.19865905140302956No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8300.19818150560638767No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8060.19245095604668488No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7830.18695917938530304No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7770.18552654199537735No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7580.18098985692727934No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6810.16260434375656624No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6690.1597390689767149No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6160.14708410536570457No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6160.14708410536570457No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6020.14374128478921128No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5510.13156386697484287No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5230.12487822582185631No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5110.12201295104200492No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5070.12105785944872113No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4920.1174762659739069No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4810.11484976409237646No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4720.11270080800748791No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4580.10935798743099465No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4460.10649271265114324No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4390.1048213023628966No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4370.1043437565662547No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4340.10362743787129186No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4290.1024335733796871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)