FastQCFastQC Report
Wed 31 May 2023
EGAF00007946652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483601
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49881.0314288018428415No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16040.3316783877618119No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15440.3192714655263326No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12860.2659216999137719No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11770.24338245785265125No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9880.20430065281089163No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9410.19458189705976622No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6890.14247282367075337No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6820.14102534940994746No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6640.13730327273930368No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6520.13482188829220784No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6400.13234050384511198No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6060.12530991457834043No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5570.11517759475269904No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5550.11476403067818305No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5500.1137301204918931No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5220.10794022344866945No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4990.10318423659173574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)