FastQCFastQC Report
Sun 21 May 2023
EGAF00007946658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491548
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44830.9120167308177431No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30810.6267953485722655No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23800.48418465744952677No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC23060.46913017650361716No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT22420.45611008487472227No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT19570.39812998933979993No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18920.38490645877920365No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18480.3759551457843385No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18470.375751706852637No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18400.37432763433072663No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17940.3649694434724584No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16900.3438117945755043No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16250.330588264014908No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC14770.30047930212308865No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13750.27972853108953755No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13700.27871133643103013No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG13630.27728726390911973No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13330.2711840959580753No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13230.2691497066410605No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13020.2648774890753294No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA12890.2622327829632101No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12800.2604018325778968No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC12760.2595880768510908No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC12760.2595880768510908No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG12190.24799205774410638No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11330.23049630961777895No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC11040.22459658059843596No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC10650.21666246226207816No Hit
GTGAGCGTAGACTGCTCCGAATACCCAAAAC9870.20079422558936258No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9700.19733576375043738No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9110.18533286678004995No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG8940.18187440494112478No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8420.17129558049264773No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7810.15888580565885732No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7700.15664797741014103No Hit
GCAGTTTCTGTTGACTGCTCTGAATACCCGA7590.15441014916142473No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7470.15196888198100694No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG7420.15095168732249953No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7260.14769666441527582No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7110.1446450804397536No Hit
ATCGAAACCGTCGGTGACATCGTGTCCGGTC7100.1444416415080521No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG7080.14403476364464915No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6800.13833847355700765No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6720.1367109621033958No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6700.13630408423999282No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6140.12491150406470986No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6120.1245046262013069No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5970.12145304222578467No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5860.11921521397706837No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5810.11819801931856094No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5660.11514643534303873No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5490.11168797350411352No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5430.11046733991390464No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5350.1088398284602928No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5200.10578824448477056No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5170.1051779276896661No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5140.10456761089456168No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5070.1031435383726513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)