FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451008
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11910.26407513835674756No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11800.2616361572300269No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC9060.2008833546189868No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7960.17649354335178088No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7960.17649354335178088No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7740.17161558109833971No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7610.16873314885766993No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6500.14412161203348944No Hit
GGAAGCGTCGTTAACTGGGTTGGTCACGTCGACGTTTGCAGACG6370.14123917979281964No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5790.12837909748829288No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5330.11817972186746134No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5320.11795799631048674No Hit
GGCAGCCGGACCAAATTCCGGGTTGAAAACACCGTGCGCTACAG5030.11152795515822335No Hit
CAGGTTGTAGCAGCCCCAACCACCTTGCAGCCAGTGACCCGGCA4940.10953242514545197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)