FastQCFastQC Report
Sun 21 May 2023
EGAF00007946660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451008
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48761.0811338158081452No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17680.39201078473109124No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15610.34611359443734924No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12330.27338761174968074No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC9630.21352171136653897No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8580.19024052788420603No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8460.18757982120051084No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7580.16806797218674613No Hit
TTCCTGCACGATGCGAAAGATCGTCTGCAGG6790.1505516531857528No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6710.148777848729956No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6430.14256953313466725No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6270.13902192422307363No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5420.12017525188023272No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT5370.11906662409535973No Hit
ATGCTGCTGAAAATGAAGGCGCACATTGACC5260.11662764296863914No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4780.10598481623385837No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC4530.1004416773094934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)