FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432786
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22080.5101828617376718No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15620.36091740490681307No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13830.3195574718221014No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13510.3121635173041642No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10200.23568230025925052No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9800.22643985711182893No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8970.20726178758092914No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8900.20564436003013037No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7780.1797655192173499No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7430.171678381463356No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7290.16844352636175847No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6480.14972757898822975No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6270.1448752963358334No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5880.13586391426709735No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5830.13470860887366967No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5410.125004043568877No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5410.125004043568877No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4770.11021613453300245No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4700.10859870698220367No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4330.1000494470708387No Hit

[OK]Adapter Content

Adapter graph