FastQCFastQC Report
Sun 21 May 2023
EGAF00007946668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397809
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43411.091227196971411No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34880.8768026867164895No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27560.6927947834262171No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17290.4346306896022966No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15850.39843241354519376No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15780.39667277512575133No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15370.3863663215261595No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15350.3858635676920331No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10890.27374946268183975No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9630.24207597113187485No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9600.24132184038068522No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9440.2372998097076738No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8530.21442451025492135No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8040.20210704131882387No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7980.20059877981644458No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7430.18677304937796782No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7360.18501341095852533No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7260.18249964178789319No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6320.1588702115839511No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6090.15308854249149717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5980.15032339640380182No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5910.14856375798435933No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5910.14856375798435933No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5710.14353621964309507No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5680.1427820888919054No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5610.14102245047246292No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5310.1334811429605665No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4810.12091229710740582No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4760.11965541252208975No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4760.11965541252208975No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4740.11915265868796332No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4440.11161135117606692No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4430.11135997425900368No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4260.10708656666892906No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4170.10482417441536013No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4170.10482417441536013No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4110.10331591291298085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)