FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404385
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40961.0128961262163534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35250.8716940539337513No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28400.7023010250132917No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17440.4312721787405566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16140.39912459660966654No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15460.38230893826427786No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15360.37983604733113246No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15150.37464297637152716No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10380.2566860788604919No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10260.25371860974071736No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9510.23517192774212695No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9390.23220445862235248No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8220.20327163470455134No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8090.20005687649146234No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7950.1965948291850588No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7620.188434289105679No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7490.18521953089259No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7140.1765644126265811No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6510.16098519974776512No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6450.1595014651878779No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6380.15777044153467612No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6330.15653399606810342No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6290.15554483969484525No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5890.14565327596226368No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5820.1439222523090619No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5320.13155779764333494No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5220.12908490671018955No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5200.12859032852356045No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4870.12042978844418067No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4850.11993521025755159No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4590.11350569383137357No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4550.1125165374581154No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4510.11152738108485725No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4440.10979635743165547No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4400.10880720105839732No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4400.10880720105839732No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4350.10757075559182463No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG4250.10509786465867924No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4170.1031195519121629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)