FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413571
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21350.5162354226964656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14470.3498794644692205No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11730.2836272369194165No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9570.23139920352249072No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8520.20601057617676286No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8320.201174647158529No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6150.14870481731069152No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6000.1450778705470161No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5600.13540601251054837No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5460.13202086219778467No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5230.1264595438268157No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5140.12428337576861047No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4780.11557870353578949No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC4580.11074277451755563No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4530.10953379226299716No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4440.10735762420479192No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4440.10735762420479192No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4420.10687403130296853No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4380.10590684549932176No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4200.10155450938291127No Hit

[OK]Adapter Content

Adapter graph