FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408260
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43931.076029980894528No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35420.8675843825013472No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20580.504090530544261No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15740.3855386273453192No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13270.3250379660020575No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13040.3194043011806202No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13010.31866947533434575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12980.3179346494880713No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11650.28535737030323816No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10710.2623328271199726No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9090.22265223142115317No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8910.21824327634350657No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8840.21652868270219958No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6140.1503943565375006No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5830.14280115612599814No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5780.14157644638220743No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5270.12908440699554205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)