FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518463
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43950.8476979070830513No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11280.21756615226158857No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9600.18516268277582007No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6780.13077114471042292No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6600.1272993444083763No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6340.1222845217498645No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6080.1172696990913527No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5790.11167624304916647No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5540.10685429818521283No Hit
GCTGCGGTCAAGCAGGCCCAGGCGGCATATG5230.10087508655391031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)