FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512176
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA24810.4844037986941989No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17440.3405079503920527No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13700.26748617662678453No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10340.20188372746868266No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10200.19915029208709506No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9590.18724032363874918No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9430.18411639748836336No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9300.1815782074911749No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8570.16732529443003968No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8020.15658679828808847No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7970.1556105713660929No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6600.12886195370341447No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6590.12866670831901533No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6570.12827621755021712No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6550.12788572678141888No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6320.12339508294023928No Hit
ACGGGCTGCGGATGCAGCCACGGATGCAGAGGTGGTACGAACGC5930.11578051294867389No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5620.1097279060323014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)