FastQCFastQC Report
Wed 31 May 2023
EGAF00007946687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494037
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19020.38499140752615696No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13880.28095061705904617No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12240.24775472282440383No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10360.2097008928481065No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10070.20383088716027345No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8690.1758977566457573No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8270.1673963690978611No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7750.15687084165760865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)