FastQCFastQC Report
Sun 21 May 2023
EGAF00007946688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494037
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39920.8080366450286113No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35810.7248444954527697No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19690.39855314480494375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18620.37689484795673195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15070.30503788177808544No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10220.20686709699880781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)