FastQCFastQC Report
Wed 31 May 2023
EGAF00007946689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519843
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19810.3810765942794267No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18790.3614552855381336No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17750.34144924525289366No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14890.28643263446848377No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13780.26508003377942957No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13730.2641182049195623No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13060.25122969819734037No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10790.20756266795936468No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10590.20371535251989542No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9920.19082684579767353No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9870.18986501693780622No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9400.18082382565505353No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9170.17639941289966393No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8630.16601166121309704No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8210.15793229879021167No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7540.14504379206798976No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7350.14138884240049399No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6900.13273238266168824No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6890.13254001688971478No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6560.12619194641459056No Hit
ACGACGGGAGGAGCGAGAGTTCACAGACGGACGACGACCTGGGC6230.11984387593946635No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6190.11907441285157248No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6150.11830494976367864No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5870.11291870814842174No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5680.10926375848092597No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5520.1061859061293506No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5500.10580117458540367No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5480.10541644304145675No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5260.1011843960580406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)