FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527410
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC15120.2866839839972697No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12880.24421228266434084No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11510.21823628675982634No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11200.2123585066646442No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10130.1920706850457898No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8690.16476744847462127No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7940.150547012760471No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6990.1325344608558806No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6830.12950076790352857No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6160.11679717866555431No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5990.11357387990368024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)