FastQCFastQC Report
Sun 21 May 2023
EGAF00007946698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527410
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18680.354183652187103No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG15250.28914885952105573No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14230.2698090669498113No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11890.22544130752166247No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11880.22525170171214046No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11280.21387535314082023No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9070.1719724692364574No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8650.16400902523653324No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7430.1408771164748488No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7400.14030829904628278No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6680.1266566807606985No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6320.11983087161790637No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5570.1056104359037561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)