FastQCFastQC Report
Wed 31 May 2023
EGAF00007946700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510942
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43990.8609587781000584No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19110.3740150545463086No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG13790.26989364741986366No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11050.2162672084111308No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10770.21078713435184424No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10210.19982698623327108No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8780.1718394651447718No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8590.1681208434616845No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7450.1458091133631606No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6500.127216004947724No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6400.12525883564083595No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6220.12173593088843744No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5230.10235995475024562No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5110.10001135158197996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)