FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533685
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44330.8306397968839297No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30300.5677506394221311No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14330.26851045092142367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13630.25539409951563186No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11200.2098616224926689No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11020.20648884641689386No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10120.18962496603801868No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6930.12985187891733888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6490.12160731517655546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5700.10680457573287615No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5650.10586769348960529No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5570.10436868190037195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)