FastQCFastQC Report
Sun 21 May 2023
EGAF00007946704

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946704
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566226
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48280.8526630709292755No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21570.38094329825899903No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16580.2928159427507744No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15890.28062999579673137No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13830.2442487628614723No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13020.22994352078498692No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10490.18526171528682894No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9160.1617728610130937No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9160.1617728610130937No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8990.15877052625630048No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7540.13316237686012297No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6800.12009339027172895No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6770.11956356649111838No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5950.10508171648776284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)