FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431496
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15340.3555073511689564No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14450.3348814357491147No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12880.2984963939410794No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12160.28181026011828614No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10700.2479744887553998No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9700.2247993028904092No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9300.21552922854441292No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8750.20278287631866806No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8310.1925857945380722No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8110.18795075736507408No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7480.17335039027012997No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6510.15087045998108906No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6500.15063870812243915No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6470.14994345254648941No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6300.146003670949441No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6130.14206388935239259No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5980.138587611472644No Hit
CACACCGTTCAGCTGCTGGGTGTGTTCATCAGCTTCGTTGTATT5800.1344160780169457No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5670.13140330385449692No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5620.13024454456124737No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5590.12954928898529766No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5490.1272317703987986No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5240.12143797393255094No Hit
AACACACTGGCCGTTGCGGCAGACGTAGTTAGTACGGCCAACCA5090.11796169605280235No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC4920.11402191445575394No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4600.10660585497895693No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4510.10452008825110777No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC4510.10452008825110777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)