FastQCFastQC Report
Wed 31 May 2023
EGAF00007946711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418026
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18280.43729337409634805No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18170.43466195882552755No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16060.3841866295397894No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13540.32390329788099304No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11280.26983967504413603No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8920.21338385650653308No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8020.1918540951998201No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6270.1499906704367671No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5370.12846090913005412No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5340.12774325041983037No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5250.12559027428915903No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5140.12295885901833857No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5090.12176276116796564No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4760.11386851535550421No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4560.10908412395401243No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4550.10884490438393783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)