FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418026
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45031.0772057240458728No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40800.9760158459043218No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22300.5334596412663327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21460.5133651973800673No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13730.3284484697124102No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8510.20357585413347495No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6320.15118676828714003No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6030.14424940075497697No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5730.1370728136527393No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5450.13037466569065084No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5420.12965700698042706No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5160.12343729815848775No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4890.11697836976647384No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4720.11291163707520585No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4610.11028022180438538No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4500.1076488065335649No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4450.10645270868319195No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4410.1054958304028936No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4230.101189878141551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)