FastQCFastQC Report
Sun 21 May 2023
EGAF00007946714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420048
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48131.1458214299318175No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17710.42161848169732985No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9750.23211632956233572No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9140.2175941797127947No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6360.151411267283739No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5920.14093627394964384No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5880.13998400182836246No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5520.13141355273683009No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4880.11617719879632804No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4830.11498685864472633No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4310.1026073210680684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)