FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438506
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54211.2362430616684834No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47711.0880124787346126No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23670.5397873689299577No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC18490.4216589966841959No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12070.2752527901556649No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11780.2686394256863076No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10280.23443236808618353No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10240.23352017988351353No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8770.19999726343539198No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT8510.19406804011803713No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7440.16966700569661533No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7420.16921091159528034No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7150.16305364122725802No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7100.16191340597392054No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6460.14731839473120092No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6190.1411611243631786No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5840.13317947758981633No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4880.11128696072573695No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4730.10786625496572452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)