FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416366
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11950.28700710432648197No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10680.2565050940758852No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10210.24521694855007375No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9780.2348894962605016No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8440.202706272846486No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8040.1930993404840933No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7890.18949674084819604No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7710.18517362128511933No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7340.1762872088499061No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6760.16235715692443667No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6730.16163663699725722No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6710.1611562903791376No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6520.15659299750700106No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6350.15251005125298417No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6120.14698606514460835No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6030.14482450536306998No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4900.11768492143931061No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4830.11600370827589189No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4830.11600370827589189No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4820.11576353496683207No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4390.1054360826772599No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4220.101353136423243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)