FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416366
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44731.0742952114245639No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22420.538468558912111No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18740.45008478117809814No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15560.37370966889707613No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12520.30069698294289154No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11850.2846053712358838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10610.25482388091246644No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8800.21135251197263943No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8610.2067892191005029No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8430.2024660995374262No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7440.17868894194050428No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6830.1640383700878554No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6740.16187681030631704No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6520.15659299750700106No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6000.14410398543589054No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5920.14218259896341198No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5300.1272918538017033No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5140.12344908085674623No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4790.11504301503965263No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4600.11047972216751609No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4540.10903868231315718No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4410.10591642929537953No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4400.10567625598631972No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4340.10423521613196081No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4190.10063261649606356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)