FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455735
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20620.4524559228499018No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19880.43621841640427No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15540.3409876353582674No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14370.3153148211131469No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13940.30587951331365815No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10920.2396129329544582No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9300.2040659593842913No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9150.2007745729426092No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG8100.17773486785083437No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7950.17444348140915225No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT7590.16654415394911515No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT7450.16347219327021184No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGACGAC7270.15952252954019333No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6880.15096492479181983No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6520.14306559733178273No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6500.1426267458062251No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6380.13999363665287942No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5720.1255115363094781No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5700.12507268478392047No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5600.12287842715613241No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5450.1195870407144503No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5390.11827048613777744No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5200.11410139664498008No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5110.11212656477997082No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4830.1059826434221642No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4760.10444666308271253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)