FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455735
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52111.1434276498403677No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48981.074747386090601No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31080.6819752707165349No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16070.3526172007855442No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15580.34186533840938266No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14790.3245307031498568No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10020.2198646143043655No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9490.20823504887708869No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8390.1840982149714198No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA8380.18387878920864098No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA8170.17927084819028602No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGC7270.15952252954019333No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7040.15447573699628073No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6880.15096492479181983No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5870.12880292275116023No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5730.12573096207225692No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5710.12529211054669928No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5620.12331727868169001No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5460.1198064664772291No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5320.11673450579832577No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5320.11673450579832577No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4990.10949345562662513No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4900.10751862376161585No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4770.10466608884549133No Hit

[OK]Adapter Content

Adapter graph