FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485676
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8450.17398430229206302No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7980.1643070689101376No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7000.1441290078159102No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6510.13403997726879646No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6420.13218689002544906No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5900.12148016373055288No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5690.11715629349607556No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5680.1169503949134814No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5200.10706726294896186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)