FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478165
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA51291.0726422887496994No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25930.5422814300502964No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25130.525550803592902No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23520.4918804178473958No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21620.45214518001108406No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14820.3099348551232315No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14680.3070069954931875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13390.280028860330639No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13030.2725000784248115No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12760.2668534919954409No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12430.2599521085817657No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12290.2570242489517217No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11220.23464703606495665No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG10660.22293559754478057No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10580.22126253489904113No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9950.20808716656384305No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9570.20014011899658068No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9430.19721225936653666No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9210.19261133709075318No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8690.18173642989344682No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8670.18131816423201197No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8430.17629897629479363No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8130.17002499137327073No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7450.15580395888448548No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7390.1545491619001809No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7200.15057563811654973No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7040.14722951282507085No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6960.14555645017933141No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6790.14200119205713507No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6680.13970073091924337No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6630.1386550667656562No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6580.13760940261206905No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6070.1269436282454801No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5980.12506143276902326No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5950.12443403427687096No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5950.12443403427687096No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5880.12297010446184894No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5500.1150230568945866No Hit
CCGGAAACTCTGGAACAGCTGACCCTGGTTG5470.1143956584024343No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5470.1143956584024343No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5070.10603034517373709No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT4990.10435728252799766No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4920.10289335271297564No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4840.10122029006723621No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG4810.10059289157508391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)