FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439456
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15450.3515710332775068No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12790.29104165149639555No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12570.28603546202577734No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG12140.2762506371513872No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12110.2755679749508483No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11060.2516747979319886No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10200.23210514818320832No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9730.22141010704143307No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9410.214128376902352No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8350.19000764581664603No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7780.17703706400640792No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7070.16088072526032185No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6920.1574674142576276No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6060.1378977645088473No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5910.13448445350615307No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5670.12902315590184227No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5530.1258373989659943No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5190.11810056069322071No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA4880.11104638462098594No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4850.11036372242044709No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG4640.10558508701667517No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4490.10217177601398093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)