FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439456
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28660.6521699555814462No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27940.6357860627685138No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15270.34747506007427365No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14440.32858807252603217No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13810.31425216631471636No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13260.3017366926381708No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12370.2814843806888517No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10100.22982960751474552No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8640.19660671375518823No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8240.18750455108133693No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7660.17430641520425255No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7470.16998288793417315No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6670.15177856258647054No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6300.14335906211315808No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6080.13835287264253987No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5340.12151387169591496No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5300.12060365542852981No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5160.11741789849268186No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5090.11582502002475789No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4590.10444731668244375No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4510.1026268841476735No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4480.10194422194713465No Hit

[OK]Adapter Content

Adapter graph