FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466441
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG14220.3048617081260009No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12010.2574816536282188No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11890.2549089809858053No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9750.20902965219609768No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7310.1567186418003563No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7210.15457474793167839No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6740.14449844674889215No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6690.14342649981455316No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6590.14128260594587527No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6320.13549409250044483No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5700.12220195051464172No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5350.11469832197426898No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4710.10097740121473027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)