FastQCFastQC Report
Sun 21 May 2023
EGAF00007946734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466441
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16140.3460244704046171No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15920.3413079038935256No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG14540.3117221685057703No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12400.2658428397160627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9990.2141749974809247No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8240.176656854779061No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7930.17001078378615944No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7900.16936761562555608No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7080.15178768590239708No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6700.14364088920142098No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6630.1421401634933464No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6040.12949118966814666No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5120.10976736607630977No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5000.10719469343389626No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4860.10419324201774716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)