FastQCFastQC Report
Sun 21 May 2023
EGAF00007946735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469851
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7800.16601007553458436No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7320.15579407088630226No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6150.1308925595561146No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC6020.12812572496387153No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5400.11493005229317378No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4860.10343704706385641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)