FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483234
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14120.2921979827578357No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT7720.1597569707429527No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT6130.12685365682050517No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5470.11319567745647036No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA5270.10905689583100527No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5240.10843607858718551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)