FastQCFastQC Report
Wed 31 May 2023
EGAF00007946738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483234
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14440.29882003335857993No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11190.2315648319447721No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8600.1779676098949991No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG8350.17279413286316775No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA6140.12706059590177843No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6010.12437038784522614No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC5580.11547200735047616No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5150.10657362685572622No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5050.10450423604299366No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5020.10388341879917388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)