FastQCFastQC Report
Sun 21 May 2023
EGAF00007946743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415041
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG15330.3693610992648919No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12640.30454822535604914No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG11050.26623875713483725No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10770.2594924356870767No Hit
CGGACCGGACGGCATGTCTTTGGCTGGTGCCTGTGCAGGCGGAC9490.22865210906874261No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9210.22190578762098204No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8150.1963661421401741No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7370.17757281810712677No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7100.1710674367110719No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6810.1640801752116056No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6250.15058753231608443No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG5980.1440821509200296No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5730.1380586496273862No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5420.13058950802450842No Hit
TTCCGGCGCGGAGGTCGGAGAATCGGAGCTGGTGTCTTCGGTCA5310.12793916745574535No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5240.12625258709380519No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4910.11830156538751592No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG4900.11806062533581019No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4410.10625456280222917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)