FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415041
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36830.8873822104322224No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29880.7199288744967365No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG16300.3927322842803482No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13760.3315335111470915No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA10760.259251495635371No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9880.2380487710852663No Hit
GCGACCGGTCTGGCGTTCCGCACTCCGAACC9440.2274474088102139No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8300.1999802429157601No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7690.18528289976171028No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6850.16504393541842854No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6700.16142983464284252No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6210.1496237721092615No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5760.1387814697825034No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5760.1387814697825034No Hit
GACGGTCCGTACGCACCGTTCCCGCCTCGCC5490.13227608838644855No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5240.12625258709380519No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5140.12384318657674784No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5110.12312036642163063No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA5070.1221566062148077No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5060.12191566616310195No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC4350.10480892249199475No Hit
GCACCGCCGGGCTCTCCGGCCCCACCGCCGC4330.10432704238858329No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4270.1028814020783489No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4230.10191764187152594No Hit

[OK]Adapter Content

Adapter graph